XML Links

• XML websites
  • W3C
  • XML.org
  • XMLDB
  • XML.com
  • rpbourret.com/xml
  • XML design patterns
• XML Software
  • XMLSoftware
  • Free XML Tools
  • DrawTag: XML Tree Diagrams
  • Validating website
• XML Datasets
  • THALIA - could provide a test-bed for the XML transformation - integration algorithms
  • DELOS
  • Focus - Shakespeare Test Collection
  • Bioinformatics: EBI - NCBI - Ensembl
  • UW Repository
• XML APIs
  • Xerces (Java)
  • Xalan (Java)
• XML Projects
  • XMark - XML Benchmark project
  • XDuce - A Typed XML Processing Language
• XML Database Products
  • Native XML Databases (NXDs)
  • XML-Enabled Databases (XEDs)
  • NXDs & XEDs overview
• Had a look at
  • Apache Xindice - supports XPath & very small docs
  • dbXML - supports XPath
  • Oracle - documentation
• XQuery implementations
  • Galax - supports latest W3C recommendations & drafts
• XML Articles/Books
  • The Attribute/Text Conundrum
  • Marking-up at the foundation
  • Using W3C XML Schema
  • XML FAQ
  • Weaving the Web
  • The Semantic Web
  • Rethinking the Semantic Web, Part I
  • Rethinking the Semantic Web, Part II
  • W3C XML Schema made simple (or why you should never use half of XML Schema's features).

Ontologies Links

• OWL tools
• OWL ontologies
• SchemaWeb
• DAML Ontology Library
• Swoogle
• MGED ontology
• OilEd - DAML+OIL ontology editor
• RDFData
• protege - ontology editor

Articles

• W3C Design Issues
  • Bussiness Model for the Semantic Web

Open Source Links

• www.opensource.org
• SourceForge

Tech Links

• Java
  • Eclipse Java IDE
  • Eclipse call hierarchy plugin
  • Eclipse profiler plugin
  • Java & CLASSPATH
  • Java String constraint
• JUnit
  • Test Infected: Programmers Love Tests
  • Using JUnit with Eclipse IDE
• PostgreSQL
  • PostgreSQL web site
  • Installing PostgreSQL on Windows with Cygwin
  • PostgreSQL 8 with Windows native support - AutoMed does not support it yet
• Object Databases
  • Portal
• Parsing
  • BNF, EBNF LL & LR Grammars
  • JavaCC & JavaCC FAQ
  • Short intro on JavaCC
  • Short intro to JJTree
  • XQuery using JavaCC & JJTree (IBM)
  • XQuery using JavaCC & JJTree (different)
  • Creating a grammar for your AutoMed wrapper using JavaCC
  • JavaCC OQL parser
  • JLex manual
  • Java DTD parser 1
  • Java DTD parser 2
  • Java DTD parser 3
• TeX
  • WinEdt - Latex editor for Windows.
  • TeX documentation
  • GSScript & GSView - Interpreter & viewer for PostScript.
  • LLNCS format - Springer-Verlag's instructions to prepare your manuscript for camera-ready production.
  • The not so short introduction to LaTeX 2
  • The Comprehensive LaTeX Symbol List
  • AMS LaTeX
  • Using imported graphics in LaTeX 2
  • Thesis and algorithms information
  • Helpful things
  • Algorithm2e.sty (pdf guide)
  • Multiple bibliography files
  • TikZ
  • qtree
• Image Software
  • TikZ
  • ditaa
  • ImageMagick - conversion
  • Inkscape - general purpose open source SVG editor
  • Colour wheel
• Other
  • Connecting to CVS via SSH2
  • A Beginner's Guide to Unix, vi & X-Windows
  • Regular expressions
  • www.rpbourret.com

Other

• Academic Job Hunting
  • Tips for Academic Job Search
• Component reviews
  • Ars Technica
  • Tech Report
  • Tom's Hardware Guide

Research Links

• Bloomsbury Postgraduate Skills Network
  
• DBLP server
• CiteSeer - Scientific Literature Digital Library
• DoCIS - Documents in Computer Science & Information Systems
• EventSeer - digital library of CFP announcements
• IEEE Digital Library - from within Birkbeck
• Library of University of California, Davis - List of libraries, journals web sites etc. related to Informatics
  
• DBWorld
• HomePageSearch
• Apache Forrest - RAD tool for project websites
  
• EPSRC - BBSRC
• CS Terminology - English-to-Greek
• Computer Science Conference Rankings
• Computer Science Conference Rankings
• Computer Science Journal Rankings

• Citations
• Conferences, Workshops, Journals etc.
• Confious - Conference Management System
  

BioInformatics Links

• Organisations
  • International Society of Computational Biology (ISCB)
  • Hellenic Society of Computational Biology (HSCB)
  • European BioInformatics Institute (EBI)
  • European Molecular Biology Laboratory (EMBL)
• Other
  • BioInformatics FAQ - (from bioinformatics.org)
  • BioMart project
  • BioInformatics Workshop at INA, CERTH, Thessaloniki, Greece

Business Process Modelling Links

• IBM article
• ebizQ article

Links to Tutorials - Lectures

• The Functional Approach to Data Management (book, notes)
• XML: Dr. Lachlan McKinnon's web page (under BSc courses)
• Developing Internet Applications (Adv. Inf. Systems module)
• Devoloping Internet Applications (E-Commerce module)
• Advanced Databases: Prof. Alex Poulovassilis' web page
• Bioinformatics: Dr. Ela Hunt's web page
• Normalisation: Curtis Dyreson notes
• XNF: Li-Yan Yuan's notes
• Textbooks, lecture notes and tutorials in mathematics - collection of links by Alexandre Stefanov
• Courses by Sarantos Kapidakis

Functional Programming - Lambda Calculus

• Books
  • Functional Programming (International Computer Science Series), A.J. Field and P.G. Harrison, Addison Wesley,1988.
  • The Implementation of Functional Programming Languages, Simon Peyton Jones, Prentice Hall, 1987 (with Phil Wadler, Peter Hancock and David Turner). Online
  • The Lambda Calculus: Its Syntax and Semantics (Studies in Logic & the Foundation of Mathematics), H.P. Barendregt, North-Holland, 1987.
• Languages
  • Caml - OCaml
• Sites
  • Lambda the Ultimate
• Notes
  • David Stotts' notes on Lambda calculus
  • Martin Abadi's notes on Lambda calculus
  • Links to tutorials by John Hughes

People with similar research interests

• Peter Gursky
• Dr. Ela Hunt
• Dr. Lachlan McKinnon
• Deise de Brum Saccol
• Jan Mendling